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Species belonging to selected taxon:

Pinus taeda



ABOUT THIS RECORD

ID: MNEST002048
species: Pinus taeda
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCC

miRNA*
AATGTTGTCTGGCTCGACT

mismatches: 3
bulges: 0

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pre-miRNA
AGACCTCCATGTTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCCA
ATCGGAGATCTTCCC


dot-bracket secondary structure
(((.((((.....(((((.((((((((..((((((.(((((..(((((((((((((...)))).)))))))))..))))).))))))..)))))))).))
))))))).)))....



SIMILARITIES
miRBase pta-MIR166a: 2e-48

PMRD pta-miR166a: 2e-48

microPC miR166: 8e-39
UniProt no hits

RFAM mir-166: 0.0000001
most similar mature miRNAs

Identical with: pta-MIR166a from miRBase (MNEST039420)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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